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1.

Gene Regulatory Circuits in Innate and Adaptive Immune Cells.

Saini, Ankita; Ghoneim, Hazem E; Lio, Chan-Wang Jerry; Collins, Patrick L; Oltz, Eugene M.

Annu Rev Immunol ; 40: 387-411, 2022 04 26.

Artículo en Inglés | MEDLINE | ID: mdl-35119910

2.

Immune evasion, infectivity, and fusogenicity of SARS-CoV-2 BA.2.86 and FLip variants.

Qu, Panke; Xu, Kai; Faraone, Julia N; Goodarzi, Negin; Zheng, Yi-Min; Carlin, Claire; Bednash, Joseph S; Horowitz, Jeffrey C; Mallampalli, Rama K; Saif, Linda J; Oltz, Eugene M; Jones, Daniel; Gumina, Richard J; Liu, Shan-Lu.

Cell ; 187(3): 585-595.e6, 2024 Feb 01.

Artículo en Inglés | MEDLINE | ID: mdl-38194968

3.

The transcription factor Aiolos restrains the activation of intestinal intraepithelial lymphocytes.

Yomogida, Kentaro; Trsan, Tihana; Sudan, Raki; Rodrigues, Patrick F; Ulezko Antonova, Alina; Ingle, Harshad; Luccia, Blanda Di; Collins, Patrick L; Cella, Marina; Gilfillan, Susan; Baldridge, Megan T; Oltz, Eugene M; Colonna, Marco.

Nat Immunol ; 25(1): 77-87, 2024 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-38049581

4.

Whole-genome profiling of DNA methylation and hydroxymethylation identifies distinct regulatory programs among innate lymphocytes.

Peng, Vincent; Xing, Xiaoyun; Bando, Jennifer K; Trsan, Tihana; Di Luccia, Blanda; Collins, Patrick L; Li, Daofeng; Wang, Wei-Le; Lee, Hyung Joo; Oltz, Eugene M; Wang, Ting; Colonna, Marco.

Nat Immunol ; 23(4): 619-631, 2022 04.

Artículo en Inglés | MEDLINE | ID: mdl-35332328

5.

Gene Regulatory Programs Conferring Phenotypic Identities to Human NK Cells.

Collins, Patrick L; Cella, Marina; Porter, Sofia I; Li, Shasha; Gurewitz, Greer L; Hong, Henoch S; Johnson, R Paul; Oltz, Eugene M; Colonna, Marco.

Cell ; 176(1-2): 348-360.e12, 2019 01 10.

Artículo en Inglés | MEDLINE | ID: mdl-30595449

6.

Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues.

Cella, Marina; Gamini, Ramya; Sécca, Cristiane; Collins, Patrick L; Zhao, Shanrong; Peng, Vincent; Robinette, Michelle L; Schettini, Jorge; Zaitsev, Konstantin; Gordon, William; Bando, Jennifer K; Yomogida, Kentaro; Cortez, Victor; Fronick, Catrina; Fulton, Robert; Lin, Lih-Ling; Gilfillan, Susan; Flavell, Richard A; Shan, Liang; Artyomov, Maxim N; Bowman, Michael; Oltz, Eugene M; Jelinsky, Scott A; Colonna, Marco.

Nat Immunol ; 20(8): 980-991, 2019 08.

Artículo en Inglés | MEDLINE | ID: mdl-31209406

7.

Publisher Correction: Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues.

Cella, Marina; Gamini, Ramya; Sécca, Cristiane; Collins, Patrick L; Zhao, Shanrong; Peng, Vincent; Robinette, Michelle L; Schettini, Jorge; Zaitsev, Konstantin; Gordon, William; Bando, Jennifer K; Yomogida, Kentaro; Cortez, Victor; Fronick, Catrina; Fulton, Robert; Lin, Lih-Ling; Gilfillan, Susan; Flavell, Richard A; Shan, Liang; Artyomov, Maxim N; Bowman, Michael; Oltz, Eugene M; Jelinsky, Scott A; Colonna, Marco.

Nat Immunol ; 20(10): 1405, 2019 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-31388149

8.

Distinct Gene Regulatory Pathways for Human Innate versus Adaptive Lymphoid Cells.

Koues, Olivia I; Collins, Patrick L; Cella, Marina; Robinette, Michelle L; Porter, Sofia I; Pyfrom, Sarah C; Payton, Jacqueline E; Colonna, Marco; Oltz, Eugene M.

Cell ; 165(5): 1134-1146, 2016 May 19.

Artículo en Inglés | MEDLINE | ID: mdl-27156452

9.

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites.

Kaiko, Gerard E; Ryu, Stacy H; Koues, Olivia I; Collins, Patrick L; Solnica-Krezel, Lilianna; Pearce, Edward J; Pearce, Erika L; Oltz, Eugene M; Stappenbeck, Thaddeus S.

Cell ; 165(7): 1708-1720, 2016 Jun 16.

Artículo en Inglés | MEDLINE | ID: mdl-27264604

10.

A B-Cell-Specific Enhancer Orchestrates Nuclear Architecture to Generate a Diverse Antigen Receptor Repertoire.

Barajas-Mora, E Mauricio; Kleiman, Eden; Xu, Jeffrey; Carrico, Nancy C; Lu, Hanbin; Oltz, Eugene M; Murre, Cornelis; Feeney, Ann J.

Mol Cell ; 73(1): 48-60.e5, 2019 01 03.

Artículo en Inglés | MEDLINE | ID: mdl-30449725

11.

Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus.

Guo, Changying; Gerasimova, Tatiana; Hao, Haiping; Ivanova, Irina; Chakraborty, Tirtha; Selimyan, Roza; Oltz, Eugene M; Sen, Ranjan.

Cell ; 147(2): 332-43, 2011 Oct 14.

Artículo en Inglés | MEDLINE | ID: mdl-21982154

12.

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites.

Kaiko, Gerard E; Ryu, Stacy H; Koues, Olivia I; Collins, Patrick L; Solnica-Krezel, Lilianna; Pearce, Edward J; Pearce, Erika L; Oltz, Eugene M; Stappenbeck, Thaddeus S.

Cell ; 167(4): 1137, 2016 11 03.

Artículo en Inglés | MEDLINE | ID: mdl-27814510

13.

SARS-CoV-2 spreads through cell-to-cell transmission.

Zeng, Cong; Evans, John P; King, Tiffany; Zheng, Yi-Min; Oltz, Eugene M; Whelan, Sean P J; Saif, Linda J; Peeples, Mark E; Liu, Shan-Lu.

Proc Natl Acad Sci U S A ; 119(1)2022 01 04.

Artículo en Inglés | MEDLINE | ID: mdl-34937699

14.

Enhancer sequence variants and transcription-factor deregulation synergize to construct pathogenic regulatory circuits in B-cell lymphoma.

Koues, Olivia I; Kowalewski, Rodney A; Chang, Li-Wei; Pyfrom, Sarah C; Schmidt, Jennifer A; Luo, Hong; Sandoval, Luis E; Hughes, Tyler B; Bednarski, Jeffrey J; Cashen, Amanda F; Payton, Jacqueline E; Oltz, Eugene M.

Immunity ; 42(1): 186-98, 2015 Jan 20.

Artículo en Inglés | MEDLINE | ID: mdl-25607463

15.

The transcription factor BATF controls the global regulators of class-switch recombination in both B cells and T cells.

Ise, Wataru; Kohyama, Masako; Schraml, Barbara U; Zhang, Tingting; Schwer, Bjoern; Basu, Uttiya; Alt, Frederick W; Tang, Jun; Oltz, Eugene M; Murphy, Theresa L; Murphy, Kenneth M.

Nat Immunol ; 12(6): 536-43, 2011 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-21572431

16.

HCoDES reveals chromosomal DNA end structures with single-nucleotide resolution.

Dorsett, Yair; Zhou, Yanjiao; Tubbs, Anthony T; Chen, Bo-Ruei; Purman, Caitlin; Lee, Baeck-Seung; George, Rosmy; Bredemeyer, Andrea L; Zhao, Jiang-Yang; Sodergen, Erica; Weinstock, George M; Han, Nathan D; Reyes, Alejandro; Oltz, Eugene M; Dorsett, Dale; Misulovin, Ziva; Payton, Jacqueline E; Sleckman, Barry P.

Mol Cell ; 56(6): 808-18, 2014 Dec 18.

Artículo en Inglés | MEDLINE | ID: mdl-25435138

17.

Durability of Booster mRNA Vaccine against SARS-CoV-2 BA.2.12.1, BA.4, and BA.5 Subvariants.

Qu, Panke; Faraone, Julia N; Evans, John P; Zheng, Yi-Min; Yu, Lianbo; Ma, Qin; Carlin, Claire; Lozanski, Gerard; Saif, Linda J; Oltz, Eugene M; Gumina, Richard J; Liu, Shan-Lu.

N Engl J Med ; 387(14): 1329-1331, 2022 10 06.

Artículo en Inglés | MEDLINE | ID: mdl-36069925

18.

Neutralization of the SARS-CoV-2 Omicron BA.4/5 and BA.2.12.1 Subvariants.

Qu, Panke; Faraone, Julia; Evans, John P; Zou, Xue; Zheng, Yi-Min; Carlin, Claire; Bednash, Joseph S; Lozanski, Gerard; Mallampalli, Rama K; Saif, Linda J; Oltz, Eugene M; Mohler, Peter J; Gumina, Richard J; Liu, Shan-Lu.

N Engl J Med ; 386(26): 2526-2528, 2022 06 30.

Artículo en Inglés | MEDLINE | ID: mdl-35704428

19.

Neutralization of the SARS-CoV-2 Deltacron and BA.3 Variants.

Evans, John P; Qu, Panke; Zeng, Cong; Zheng, Yi-Min; Carlin, Claire; Bednash, Joseph S; Lozanski, Gerard; Mallampalli, Rama K; Saif, Linda J; Oltz, Eugene M; Mohler, Peter J; Gumina, Richard J; Liu, Shan-Lu.

N Engl J Med ; 386(24): 2340-2342, 2022 06 16.

Artículo en Inglés | MEDLINE | ID: mdl-35584183

20.

Systems Approaches for Studying Immunity.

Vahedi, Golnaz; Oltz, Eugene M.

J Immunol ; 210(7): 843-844, 2023 04 01.

Artículo en Inglés | MEDLINE | ID: mdl-36947825

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Gene Regulatory Circuits in Innate and Adaptive Immune Cells.

Immune evasion, infectivity, and fusogenicity of SARS-CoV-2 BA.2.86 and FLip variants.

The transcription factor Aiolos restrains the activation of intestinal intraepithelial lymphocytes.

Whole-genome profiling of DNA methylation and hydroxymethylation identifies distinct regulatory programs among innate lymphocytes.

Gene Regulatory Programs Conferring Phenotypic Identities to Human NK Cells.

Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues.

Publisher Correction: Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues.

Distinct Gene Regulatory Pathways for Human Innate versus Adaptive Lymphoid Cells.

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites.

A B-Cell-Specific Enhancer Orchestrates Nuclear Architecture to Generate a Diverse Antigen Receptor Repertoire.

Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus.

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites.

SARS-CoV-2 spreads through cell-to-cell transmission.

Enhancer sequence variants and transcription-factor deregulation synergize to construct pathogenic regulatory circuits in B-cell lymphoma.

The transcription factor BATF controls the global regulators of class-switch recombination in both B cells and T cells.

HCoDES reveals chromosomal DNA end structures with single-nucleotide resolution.

Durability of Booster mRNA Vaccine against SARS-CoV-2 BA.2.12.1, BA.4, and BA.5 Subvariants.

Neutralization of the SARS-CoV-2 Omicron BA.4/5 and BA.2.12.1 Subvariants.

Neutralization of the SARS-CoV-2 Deltacron and BA.3 Variants.

Systems Approaches for Studying Immunity.